Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PAAD rs2865311 chr3:117891048 A/G 1.09E-9 178 15.87 14.15 2.2 KM Plot
PAAD rs28703275 chr4:4482545 T/C 5.84E-10 174 15.77 14.35 2.2 KM Plot
PAAD rs28718986 chr4:88380776 G/A 9.89E-5 176 15.62 15.55 6.4 KM Plot
PAAD rs28756758 chr3:197144237 C/T 6.71E-7 175 15.62 15.43 1.78 KM Plot
PAAD rs2875857 chr16:84120656 A/C 2.19E-5 172 13.47 14.6 18.17 KM Plot
PAAD rs2876950 chr7:51542362 A/G 0 178 1.03 13.07 15.72 KM Plot
PAAD rs289296 chr19:23176271 A/T 8.57E-13 178 15.55 15.4 1.37 KM Plot
PAAD rs289306 chr19:23167970 A/G 8.24E-13 178 15.57 15.27 1.37 KM Plot
PAAD rs2898096 chr5:127433214 C/T 0.000152 178 16.17 13.95 7.87 KM Plot
PAAD rs2902323 chr16:68736292 C/T 4.6E-5 177 16.15 14.18 5.97 KM Plot
PAAD rs2935447 chr19:23226117 A/T 1.16E-12 176 15.57 15.48 1.37 KM Plot
PAAD rs2944021 chr19:33444456 A/G 4.22E-5 178 15.48 15.62 4.83 KM Plot
PAAD rs2983120 chr1:16313867 T/C 2.03E-6 176 3.43 14 15.62 KM Plot
PAAD rs3040084 chr5:88250874 G/GTAT 3.96E-5 177 7.97 15.4 17.27 KM Plot
PAAD rs3095925 chr5:94607180 T/C 1.95E-8 175 2.15 17.5 14.18 KM Plot